Phase 3: Intelligence — 613 mitzvot, 13 middot, Tzara'at diagnostic

Encode all 613 mitzvot from Rambam's Sefer HaMitzvot (248 positive,
365 prohibitions). Build the 13 Middot of Rabbi Yishmael as Prolog
inference predicates for hermeneutical reasoning. Implement Tzara'at
multi-stage input validation following Vayikra 13-14. Enhance kushya
generation with kal vachomer and shnei ketuvim challenge strategies.

Architecture §4 Steps 14-15, 19-20.

New files:
  middot/   — 8 files (master + 7 rule modules)
  diagnostic/ — 4 files (tzaraat, inspection, quarantine, diagnosis)

Modified:
  mitzvot.pl     — 52 → 613 mitzvot
  relationships.pl — expanded tensions, complements, action domains
  challenge.pl   — middot-based kushya (kal vachomer, shnei ketuvim)

Tests: 293 total (184 Prolog, 76 Elixir, 33 Haskell), 0 failures.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

talmudic_engine/test/mitzvot_test.pl

@@ -1,4 +1,7 @@
 %% mitzvot_test.pl — Tests for the specification layer.
+%%
+%% Phase 3: Updated for full 613 mitzvot encoding.
+%% Numbering: Positive 1-248, Prohibition 249-613.
 
 :- use_module(library(plunit)).
 :- use_module('../src/specification/mitzvot').
@@ -8,41 +11,62 @@
 
 :- begin_tests(mitzvot).
 
-%% The specification has mitzvot
-test(mitzvot_exist) :-
-    total_encoded(Count),
-    Count > 0.
+%% The specification has exactly 613 mitzvot
+test(total_613) :-
+    total_encoded(613).
 
-%% The three categories exist
+%% The two categories exist
 test(positive_mitzvot_exist) :-
     mitzvah(_, positive, _, _).
 
 test(prohibition_mitzvot_exist) :-
     mitzvah(_, prohibition, _, _).
 
-test(belief_mitzvot_exist) :-
-    mitzvah(_, belief, _, _).
+%% Category counts match Rambam
+test(positive_count) :-
+    mitzvah_category_count(positive, 248).
 
-%% The first mitzvah is know_hashem
+test(prohibition_count) :-
+    mitzvah_category_count(prohibition, 365).
+
+%% The first mitzvah is know_hashem (Rambam Positive #1)
 test(first_mitzvah) :-
-    mitzvah(1, belief, know_hashem, always).
+    mitzvah(1, positive, know_hashem, always).
+
+%% Core beliefs
+test(unity_of_hashem) :-
+    mitzvah(2, positive, unity_of_hashem, always).
+
+test(love_hashem) :-
+    mitzvah(3, positive, love_hashem, always).
+
+test(fear_hashem) :-
+    mitzvah(4, positive, fear_hashem, always).
 
 %% Shabbat mitzvot exist
 test(shabbat_rest) :-
     mitzvah(154, positive, rest_on_shabbat, when(seventh_day)).
 
-test(shabbat_no_work) :-
-    mitzvah(155, prohibition, not_work_on_shabbat, when(seventh_day)).
+test(sanctify_shabbat) :-
+    mitzvah(155, positive, sanctify_shabbat, when(seventh_day)).
 
 %% The three halt conditions have their mitzvot
+%% (Prohibitions are numbered 249-613)
 test(no_other_gods) :-
-    mitzvah(2, prohibition, no_other_gods, always).
+    mitzvah(249, prohibition, no_other_gods, always).
 
-test(no_murder) :-
-    mitzvah(289, prohibition, not_murder, always).
+test(not_murder) :-
+    mitzvah(461, prohibition, not_murder, always).
 
-test(no_adultery) :-
-    mitzvah(330, prohibition, not_commit_adultery, always).
+test(not_commit_adultery) :-
+    mitzvah(491, prohibition, not_commit_adultery, always).
+
+%% Additional halt-related
+test(not_make_idols) :-
+    mitzvah(250, prohibition, not_make_idols, always).
+
+test(maintain_boundaries) :-
+    mitzvah(532, prohibition, maintain_boundaries, always).
 
 %% Source references exist
 test(mitzvah_sources_exist) :-
@@ -51,6 +75,48 @@ test(mitzvah_sources_exist) :-
 test(shabbat_source) :-
     mitzvah_source(154, ref(shemot, 20, 8)).
 
+test(murder_source) :-
+    mitzvah_source(461, ref(shemot, 20, 13)).
+
+%% Korbanot
+test(olah_exists) :-
+    mitzvah(64, positive, bring_olah, when(offering_required)).
+
+test(chatat_exists) :-
+    mitzvah(65, positive, bring_chatat, when(unintentional_sin)).
+
+%% Agriculture
+test(bikurim_exists) :-
+    mitzvah(125, positive, bring_bikurim, when(first_fruits_available)).
+
+test(shmitah_exists) :-
+    mitzvah(122, positive, let_land_rest_shmitah, when(seventh_year)).
+
+%% Justice
+test(appoint_judges) :-
+    mitzvah(165, positive, appoint_judges, always).
+
+test(not_accept_bribe) :-
+    mitzvah(440, prohibition, judge_not_accept_bribe, always).
+
+%% Interpersonal
+test(love_fellow) :-
+    mitzvah(192, positive, love_fellow_jew, always).
+
+test(not_gossip) :-
+    mitzvah(472, prohibition, not_gossip, always).
+
+%% Kashrut
+test(not_eat_blood) :-
+    mitzvah(561, prohibition, not_eat_blood, always).
+
+test(not_eat_meat_milk) :-
+    mitzvah(564, prohibition, not_eat_meat_and_milk, always).
+
+%% Last mitzvah
+test(last_mitzvah) :-
+    mitzvah(613, prohibition, not_eat_sanctified_that_became_tamei, when(offering)).
+
 :- end_tests(mitzvot).
 
 
@@ -105,13 +171,13 @@ test(kadash_gematria) :-
 
 :- begin_tests(relationships).
 
-%% Tensions exist
+%% Tensions exist (updated IDs for Phase 3 numbering)
 test(justice_mercy_tension) :-
-    mitzvah_conflicts_with(179, 295, _).
+    mitzvah_conflicts_with(178, 489, _).
 
 %% Complementary mitzvot
 test(complementary) :-
-    complementary_mitzvot(1, 3).
+    complementary_mitzvot(1, 2).
 
 %% Root consonant sharing
 test(consonant_sharing) :-